What happens to soil nitrogen after fumigation?

Every year, the main research field at the Strawberry Center is divided in half: fumigated and non-fumigated. Within the first few months after transplanting, I always notice how vigorous the plants on the fumigated side are compared to the non-fumigated side. Could fumigation also be influencing nutrient availability, perhaps even creating a fertilizer effect?  In 2023, I set out to investigate that possibility.

To explore whether fumigation affects nitrogen availability in the soil, I designed a study examining how two fumigants—metam sodium and chloropicrin—interacted with the application of controlled-release fertilizer (CRF) during the month following fumigation. The study took place in a commercial strawberry field on the west side of Santa Maria in sandy loam soil. Ammonium and nitrate were measured in the top 6” of the bed before fumigation, and 14, 21, and 28 days after fumigation. The plots were bed fumigated and fertilized treatments were given 42.5 lb N/acre in the form of CRF.

Six treatments were evaluated:

  1. No fumigation
  2. No fumigation + CRF
  3. Metam sodium
  4. Metam sodium + CRF
  5. Chloropicrin
  6. Chloropicrin + CRF

My idea was that after fumigation, most microbes would be killed and the nutrients they are composed of would be released into the soil. But, no increase in total nitrogen was noticed at any of the time points after fumigation with either fumigant compared to the non-fumigated control. With both fumigants, ammonium concentrations increased after fumigation (Fig. 1), while nitrate decreased (Fig. 2).

Figure 1. Mean ammonium (NH4+) concentration before fumigation (Pre) and 14, 21, and 28 days after fumigation (DAF; n=6) with A) chloropicrin (Pic) and B) metam sodium (MS). Error bars represent standard error of the mean. Comparisons of fumigant main effects are separate for each time point using a LSMeans Differences Student t-test (a = 0.05). Treatments sharing the same letter are not significantly different.
Figure 2. Mean nitrate (NO3) concentration before fumigation (Pre) and 14, 21, and 28 days after fumigation (DAF; n=6) with A) chloropicrin (Pic) and B) metam sodium (MS). Error bars represent standard error of the mean. Comparisons of fumigant main effects are separate for each time point using a LSMeans Differences Student t-test (a = 0.05). Treatments sharing the same letter are not significantly different.

There was no significant association between CRF and ammonium, nitrate, or total N in the month after fumigation. However, the chloropicrin + CRF treatment showed numerically lower nitrate and total nitrogen levels post-fumigation than the chloropicrin treatment without CRF.

So, fumigation didn’t change the total N but shifted the N pool to be balanced between ammonium and nitrate. Before fumigation, over 85% of the N pool was nitrate. But, at 14, 21, and 28 days after fumigation, it was closer to a 50:50 ratio of nitrate to ammonium with both fumigants. In non-fumigated plots, nitrate remained the dominant source of N, comprising over 90% of the N pool at all time points. These results align with studies such as Xiong et al. 2023 that showed a reduction in nitrate and an increase in ammonium post-fumigation due to inhibition of nitrifying bacteria populations. This reduction in nitrifying bacteria post-fumigation has been well researched (Castellano-Hinojosa et al. 2022; Fang et al. 2023; Xiong et al. 2023).

Surely this shift in the N pool also impacts beneficial microbial species that recolonize the soil after fumigation. Some studies have shown that beneficial bacteria like those in the genus Bacillus and fungi in the genus Mortiella increased after dazomet and chloropicrin fumigation (Li et al. 2022; Sun et al. 2023), while others show that having nitrate as the dominant N source promotes a beneficial microbiome (Zhu et al. 2023). The shift also plays a role in flowering. Shi et al. (2021) showed that having a 50:50 ratio of nitrate to ammonium caused the cultivar ‘Albion’ to produce fewer flowers compared to a ratio of 80:20.

It would be interesting to look at how the soilborne diseases of strawberries react to different ammonium-nitrate ratios. If soilborne pathogens favor nitrate as their N source, then populations of these pathogens would likely be tied to abundance of nitrifying bacteria. To find effective alternatives to fumigation, we need to understand why fumigation is so effective. More research focused on how soil nutrients are interconnected with the soil microbiome and soilborne pathogens could help us find more effective fumigant alternatives.

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2 thoughts on “What happens to soil nitrogen after fumigation?

  1. Interesting work Colin, we did this a similar trial following soil nitrogen effects from fumigation with chloropicrin together with Suzanne Klose and Husein Ajwa something like 15 years ago and had a similar result to what you have here. It was to test, as you have done, the “fumigation effect” that growers would notice after fumigation in that the plants seemed to have enhanced vigor.

    Are you going to continue to track the nitrogen through the season? My hypothesis is that the nitrifiers whose absence seems to be at cause of the piling up of ammonium in the first month post fume return as the soil returns to its previous, pre-fumigation state.

    • Thanks Mark. This was my senior project from three years ago and I did not measure nitrogen through the season, but I think your hypothesis is correct. The Castellano-Hinojosa paper that is cited in the post says the nitrification suppression post-fumigation typically lasts about 2 months.

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